PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g033110.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 116aa    MW: 12275.2 Da    PI: 10.7231
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g033110.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000113658123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++Cp+Cg  F+    L  H+r+H
  Csa18g033110.1 36 HPCPICGVEFPMGQALGGHMRRH 58
                    78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.17E-53462No hitNo description
PfamPF139121.4E-113659IPR007087Zinc finger, C2H2
PROSITE profilePS501579.6813663IPR007087Zinc finger, C2H2
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MSLGGHRASH KKPNNNNNNE TLSSSGLVKK VKTTSHPCPI CGVEFPMGQA LGGHMRRHRN  60
ESGAAGALVT RALLPEPTVT TLKKSSSGKR VACLDLSLGM VENLNLKLEL GRTVY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0154753e-96AB015475.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MMN10.
GenBankAY0509153e-96AY050915.1 Arabidopsis thaliana putative zinc finger protein Zat12 (At5g59820) mRNA, complete cds.
GenBankAY1338183e-96AY133818.1 Arabidopsis thaliana clone U11346 putative zinc finger protein Zat12 (At5g59820) mRNA, complete cds.
GenBankCP0026883e-96CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankX986733e-96X98673.1 A.thaliana mRNA for ZAT12 protein.
GenBankX986743e-96X98674.1 A.thaliana zat12 gene.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483627.12e-77PREDICTED: zinc finger protein ZAT12-like
SwissprotQ424109e-68ZAT12_ARATH; Zinc finger protein ZAT12
TrEMBLD7MT323e-66D7MT32_ARALL; Putative uncharacterized protein
TrEMBLR0GRX74e-66R0GRX7_9BRAS; Uncharacterized protein
STRINGscaffold_802618.18e-66(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.18e-67C2H2 family protein